Works

ORC ID : 0000-0001-6467-3827

Google scholar: Daniel Evans-Yamamoto

Preprints and submitted papers

TBA

Peer-reveiwed papers

2024

S. Jiang¶, D. Evans-Yamamoto¶, D. Bersenev, S.K. Palaniappan, A. Yachie-Kinoshita “ProtoCode: Leveraging large language models (LLMs) for automated generation of machine-readable PCR protocols from scientific publications”, 23 April 2023 SLAS Technology 29(3):100134 Doi: j.slast.2024.100134 (¶ equal contribution)

2023

D. Evans-Yamamoto, A.K. Dubé¶, G. Saha¶, S. Plante, D. Bradley, I. Gagnon-Arsenault, C.R. Landry “Parallel nonfunctionalization of CK1δ/ϵ kinase ohnologs following a whole-genome duplication event”, (2023) Molecular Biology and Evolution 40(12):msad246 Doi : 10.1093/molbev/msad246 (¶ equal contribution)
Y. Kijima, D. Evans-Yamamoto, H. Toyoshima, N. Yachie “A universal sequencing read interpreter”, (2023) Science Advances 9(1):eadd279 doi.org/10.1126/sciadv.add2793

2022

D. Evans-Yamamoto, F.D. Rouleau, P. Nanda, K. Makanae, Y. Liu, P.C. Després, H. Matsuo, M. Seki, A.K. Dube, D. Ascencio, N. Yachie & C.R. Landry “BFG-PCA: tools and resources that expand the potential for binary protein interaction discovery”, (2022) Nucleic Acids Research 50(9):e54 Doi: 10.1093/nar/gkac045 Related scripts

2021

G. Suzuki, Y. Saito, M. Seki, D. Evans-Yamamoto, M. Negishi, K. Kakoi, H. Kawai, C. Landry, N. Yachie & T. Mitsuyama “Machine learning approach for discrimination of genotypes based on bright-field cellular images”, (2021) npj Systems Biology and Applications 7:31 Doi: 10.1038/s41540-021-00190-w

2020

Y. Murai, T. Masuda, Y. Onuma, D. Evans-Yamamoto, N. Takeuchi, H. Mori, N. Masuyama, S. Ishiguro, N. Yachie, K. Arakawa “Complete Genome Sequence of Bacillus sp. Strain KH172YL63, Isolated from Deep-Sea Sediment”, (2020) Microbiology Resource Announcements 9:e00291-20 Doi: 10.1128/MRA.00291-20

2019

A. Marchant, A. Cisneros, A.K. Dube, I. Gagnon-Arsenault, D. Ascencio, H. Jain, S. Aube, C. Eberlein, D. Evans-Yamamoto, N. Yachie, C.R. Landry., “The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs”, (2019) eLife 8:e46754 Doi: 10.7554/eLife.46754
D. Evans-Yamamoto¶, N. Takeuchi¶, T. Masuda, Y. Murai, Y. Onuma, H. Mori, N. Masuyama, S. Ishiguro, N. Yachie, K. Arakawa”Complete Genome Sequence of Psychrobacter sp. Strain KH172YL61, Isolated from Deep-Sea Sediments in the Nankai Trough, Japan”, (2019) Microbiology Resource Announcements 8:e00326-19 Doi: 10.1128/MRA.00326-19(¶ equal contribution)

2018

H. Mori, D. Evans-Yamamoto, S. Ishiguro, M. Tomita, and N. Yachie., “Fast and global detection of periodic sequence repeats in large genomic resources”, (2018) Nucleic Acid Research 47(2):e8 Doi: 10.1093/nar/gky890

2017

N. Yachie, Robotic Biology Consortium (D. Yamamoto-Evans was involved in the IT group), and T. Natsume., “Robotic Crowd Biology: LabDroids accelerates life science experiments”, (2017) Nature Biotechnology 35(4):310-312. Doi: 10.1038/nbt.3758

Books (Japanese)

超生物学—次のX〜私たちがいま手にしている細胞工学. 編集/谷内江望, 2021年羊土社, ISBN 978-4-7581-2252-8 谷内江望, 増山七海, 関元昭, 山本-エヴァンス楠, 石黒宗, 森秀人, 坂田莉奈, 今野直輝, 松尾仁嗣, 木島佑輔.
実験医学別冊あなたのラボにAI×ロボットがやってくる. 編集/夏目　徹, 洋土社, ISBN 978-4-7581-2236-8, p.124-129　AI・ロボットコミュニティレポート “AI・LabDroidと交わす言葉をつくりだす” 山本-エヴァンス楠 & 谷内江望
バイオサイエンスとインダストリー　2017年 VOL.75 NO.1　解説記事　”タンパク質間相互作用ネットワークの超高速マッピング” 増山七海, 山本-エヴァンス楠, 谷内江望
医学のあゆみ　259巻8号　2016年11月　p.832-838 論文詳細　”バーコードフュージョン遺伝学” 山本-エヴァンス楠, 増山七海, 谷内江望 link

Poster presentations

Daniel Evans-Yamamoto, François Rouleau, Piyush Nanda, Koji Makanae, Hitoshi Matsuo, Motoaki Seki, Alexandre K. Dube, Diana Ascencio, Cristian R. Landry and Nozomu Yachie. “BFG-PCA: tools and resources that expand the potential for binary protein interaction discovery”, 2021 IBIS student day,Quebec City, Canada. 2021/8/25 Awarded the Best poster for PhD/Post-Doc division
Daniel Evans-Yamamoto, François Rouleau, Piyush Nanda, Koji Makanae, Hitoshi Matsuo, Motoaki Seki, Alexandre K. Dube, Diana Ascencio, Cristian R. Landry and Nozomu Yachie. “Pooled matrix screen of protein interactomes using Barcode Fusion Genetics-Protein-fragment Complementation Assay (BFG-PCA)”, 2021 PROTEO symposium. 2021/5/18
Daniel Evans-Yamamoto, François Rouleau, Piyush Nanda, Koji Makanae, Hitoshi Matsuo, Motoaki Seki, Alexandre K. Dube, Diana Ascencio, Cristian R. Landry and Nozomu Yachie. “Pooled matrix screen of protein interactomes using Barcode Fusion Genetics-Protein-fragment Complementation Assay (BFG-PCA)”, 2021 Cold Spring Harbor meeting: Network Biology, (Virtual). 2021/3/17
Daniel Evans-Yamamoto, Piyush Nanda, François Rouleau, Koji Makanae, Hitoshi Matsuo, Motoaki Seki, Alexandre K. Dube, Diana Ascencio, Masaru Tomita, Hiroyuki Aburatani, Cristian R. Landry and Nozomu Yachie. “Pooled matrix screen of protein interactomes using Barcode Fusion Genetics-Protein-fragment Complementation Assay (BFG-PCA)”, International Conference on Systems Biology 2019 (ICSB 2019), Okinawa, Japan. 2019/11/4
Daniel Evans-Yamamoto, Piyush Nanda, Hitoshi Matsuo, Motoaki Seki, Alexandre K. Dube, Diana Ascencio, Masaru Tomita, Hiroyuki Aburatani, Cristian R. Landry and Nozomu Yachie, “Development of Barcode Fusion Genetics-DHFR PCA”, 19th Symposium on Life Sciences of the University of Tokyo, Tokyo, Japan. 2019/4/20
Daniel Evans-Yamamoto, Piyush Nanda, Hitoshi Matsuo, Motoaki Seki, Alexandre K. Dube, Diana Ascencio, Masaru Tomita, Hiroyuki Aburatani, Cristian R. Landry and Nozomu Yachie, “Development of Barcode Fusion Genetics-DHFR PCA”, 13th LSBM Symposium, Hakone, Japan. 2019/4/3
Daniel Evans-Yamamoto, Piyush Nanda, Hitoshi Matsuo, Motoaki Seki, Alexandre K. Dube, Masaru Tomita, Hiroyuki Aburatani, Cristian R. Landry and Nozomu Yachie, **“Development of Barcode Fusion Genetics-DHFR PCA” **, IBIS student day, Quebec City, Canada. 2018/8/23
Daniel Evans-Yamamoto, Masaru Tomita and Nozomu Yachie. “Development of high-throughput technologies to screen protein interactomes”, 12th LSBM Symposium, Fuefuku, Japan. 2018/3/8
Daniel Evans-Yamamoto, Hitoshi Matsuo, Cristian R Landry, Minoru Yoshida, Masaru Tomita and Nozomu Yachie. “Screening inter-species protein interactomes using Barcode Fusion Genetics”, From Genetic Networks to a Cellular Wiring Diagram, Tokyo, Japan. 2017/4/26

Talks

TBA